Bioinformatics

🎥 A Deeper Dive into Single-Cell RNA Sequencing Foundation Models

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Rebecca Boiarsky - A Deeper Dive into Single Cell RNA Sequencing Foundation Models

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3.76K views17:59

Bioinformatics

📑 Interpretable deep learning in single-cell omics

🗓Publish year: 2024

🧑‍💻Authors: Manoj M Wagle, Siqu Long, Carissa Chen, ...
🏢University: The University of Sydney, Australia

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#review #deep_learning #single_cell

❤2👍1👏1

4.18K views08:33

Bioinformatics

📄 A Survey on Methods for Predicting Polyadenylation Sites from DNA Sequences, Bulk RNA-Seq, and Single-Cell RNA-Seq

📕Journal: Genomics, Proteomics & Bioinformatics (GPB) (I.F.=9.5)
🗓Publish year: 2022

🧑‍💻Authors: Wenbin Ye, Qiwei Lian, Congting Ye, Xiaohui Wu
🏢University: Soochow University - Xiamen University, China

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#review #Polyadenylation #RNA_Seq #Single_Cell

👍5❤4👌1

4.48K viewsedited 18:24

Bioinformatics

📄 A review of the current state of single-cell proteomics and future perspective

📕Journal: Analytical and Bioanalytical Chemistry (I.F.=4.3)
🗓Publish year: 2023

🧑‍💻Authors: Rushdy Ahmad & Bogdan Budnik
🏢University: Harvard University, USA

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#review #single_cell #proteomics

4.5K viewsedited 13:44

Bioinformatics

📄Deep learning applications in single-cell genomics and transcriptomics data analysis

📘Journal: Biomedicine & Pharmacotherapy (I.F.=6.9)
🗓Publish year: 2023

🧑‍💻Authors: Nafiseh Erfanian, A. Ali Heydari, Adib Miraki Feriz,...
🏢University: Birjand University of Medical Sciences, Iran - University of California, Merced, USA - University of Calgary, Calgary, Canada, ...

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#review #deep_learning #single_cell #genomics #transcriptomics

👍6❤2👌1

4.83K viewsedited 14:40

Bioinformatics

📃 Single-cell classification, analysis, and its application using deep learning techniques

📔Journal: BioSystems (I.F.=2)
🗓Publish year: 2024

🧑‍💻Authors: R. Premkumar, Arthi Srinivasan, K.G. Harini Devi,...
🏢University: Rajalakshmi Engineering College, Chennai, India - University Malaysia Pahang (UMP), Malaysia - Malaysia, ...

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#review #single_cell #deep_learning

❤6👍4

5.41K views19:28

Bioinformatics

📚 Single-Cell RNA Sequencing Analysis: A Step-by-Step Overview
💥Book chapter from Springer

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#bookchapter #single_cell #rna_seq

👍8❤4🔥3👏2

5.86K views04:25

Bioinformatics

🎞 Introduction to Single Cell Genomics
💥From Minnesota Supercomputing Institute

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Intro to Single Cell Genomics Oct 2024

Topic: Intro to Single Cell Genomics
Presented by: RI Bioinformatics
Date: Oct 22 2024

Learn more at https://www.msi.umn.edu

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5.81K views19:49

Bioinformatics

📃 Bioinformatics perspectives on transcriptomics: A comprehensive review of bulk and single-cell RNA sequencing analyses

📘 Journal: Quantitative Biology (I.F.=0.6)
🗓Publish year: 2025

🧑‍💻Authors: Jorge A. Tzec-Interián, Daianna González-Padilla, Elsa B. Góngora-Castillo
🏢Universities: Yucatan Scientific Research Center, Mexico

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3.79K views19:31

Bioinformatics

📹 Single Cell RNA-Seq Analysis in R

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Single Cell RNA-Seq Analysis in R With Seurat|ScRNA-seq Analysis Seurat|Bioinformatics for Beginners

Single-cell RNA sequencing (scRNA-seq) analysis in R using Seurat is a powerful method for studying gene expression at the individual cell level, enabling researchers to explore cellular heterogeneity and identify distinct cell populations.
In this bioinformatics…

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3.75K views19:10

Bioinformatics

📄A Systematic Overview of Single-Cell Transcriptomics Databases, their Use cases, and Limitations

🗓 Publish year: 2024

🧑‍💻Authors: Mahnoor N. Gondal, Saad Ur Rehman Shah, Arul M. Chinnaiyan, ...
🏢Universities: University of Michigan - University of Illinois Business College, USA

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#review #single_cell #transcriptomics

👍4❤2🙏1

3.95K views13:06

Bioinformatics

📃 Biological Multi-Layer and Single Cell Network-Based Multiomics Models - a Review

🗓 Publish year: 2025

🧑‍💻Authors: Marcello Barylli, Joyaditya Saha, Tineke E. Buffart , ...
🏢Universities: University of Amsterdam - Amsterdam University Medical Centers - Oncode Institute, Netherlands

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#review #multiomics #network #multi_layer #single_cell

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3.66K views02:51

Bioinformatics

📄Graph neural networks for single-cell omics data: a review of approaches and applications

📙 Journal: Briefings in Bioinformatics (I.F.=6.8)
🗓 Publish year: 2025

🧑‍💻Authors: Sijie Li, Heyang Hua, Shengquan Chen
🏢Universities: Nankai University, China

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#review #gnn #single_cell #omic

🙏4👍1

3.87K views14:00

Bioinformatics

📹 Single-Cell Analysis without coding!

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3.33K views10:31

Bioinformatics

📽 Unlocking Single-Cell Secrets

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Unlocking Single-Cell Secrets: A Beginner's... - Veschetti, Treccani, Malerba - ISCBacademy Tutorial

March 20, 2025 at 9:00 AM EST - Unlocking Single-Cell Secrets: A Beginner's Workshop on Single-Cell RNA Sequencing Analysis Using Seurat in R/RStudio by Laura Veschetti, Mirko Treccani, Giovanni Malerba - Hosted by ISCB - ISCBacademy Tutorial

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3.36K views18:14

Bioinformatics

📃 Mapping Cell Atlases at the Single-Cell Level

📗 Journal: Advanced Science (I.F.=14.1)
🗓Publish year: 2025

🧑‍💻Authors: Fang Ye, Jingjing Wang, Jiaqi Li, , ...
🏢Universities: Zhejiang University School of Medicine & ZhejiangUniversity, China

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#review #single_cell #cell #atlas

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5.82K views14:42

Bioinformatics

📃Methods for reconstructing gene regulatory networks from single-cell transcriptomic data

📔 Journal: Вавиловский журнал генетики и селекц (Systems Computational Biology) - [I.F.=0.8]
🗓Publish year: 2024

🧑‍💻Authors: M. A. Rybakov , N. A. Omelyanchuk , E. V. Zemlyanskaya
🏢University: Novosibirsk State University, Russia

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#review #gene #grn #single_cell

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2.6K views16:45

Bioinformatics

📃 A Survey on Foundation Language Models for Single-cell Biology

📖 Conference: In Proceedings of the 63rd Annual Meeting of the Association for Computational Linguistics
🗓Publish year: 2025

🧑‍💻Authors: Fan Zhang, Hao Chen, Zhihong Zhu, ...
🏢University: The Hong Kong University of Science and Technology, Peking University, Great Bay University, Westlake University

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#review #llm #single_cell

👍4❤1

2.21K views16:32

Bioinformatics