Bioinformatics
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Bioinformatics, Computational Biology & Systems Biology

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📃 Large Language Models in Healthcare and Medical Domain: A Review

📘Journal: Informatics (I.F.=3.4)
🗓Publish year: 2024

🧑‍💻Authors: Zabir Al Nazi and Wei Peng
🏢University: University of California Riverside - Stanford University, USA

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📲Channel: @Bioinformatics
#review #chatGPT #llm
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📃 Large language models and their applications in bioinformatics

📔 Journal: Computational and Structural Biotechnology Journal (I.F.=4.5)
🗓Publish year: 2024

🧑‍💻Authors: Oluwafemi A. Sarumi, Dominik Heider
🏢Universities: Heinrich-Heine-University Duesseldorf, Germany

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📲Channel: @Bioinformatics
#review #llm #large_language_models
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📄 Large Language Models for Bioinformatics

🗓 Publish year: 2025

🧑‍💻Authors: Wei Ruan, Yanjun Lyu, Jing Zhang, ...
🏢Universities:
🇺🇸USA: University of Georgia, University of Texas at Arlington, UNC Chapel Hill, Mayo Clinic, University of Colorado, University of Tennessee at
Chattanooga, University Indianapolis, Lehigh University


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📲Channel: @Bioinformatics
#review #chatgpt #generative_ai #llm
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📄 Deep Generative Models for Therapeutic Peptide Discovery: A Comprehensive Review

📗 Journal: ACM Computing Surveys (🔥I.F.=23.8)
🗓 Publish year: 2025

🧑‍💻Authors: Leshan Lai, Yuansheng Liu, Bosheng Song, ...
🏢Universities: Hunan University, China - State University of New York, USA

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📲Channel: @Bioinformatics
#review #llm #peptide #therapeutic
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📃 Foundation models for bioinformatics

📘 Journal: Quantitative Biology (I.F.=0.6)
🗓Publish year: 2024

🧑‍💻Authors: Ziyu Chen, Lin Wei, Ge Gao
🏢Universities: Peking University, China

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📲Channel: @Bioinformatics
#review #Transformer #chatgpt #llm
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📃 LLMs for Drug-Drug Interaction Prediction: A Comprehensive Comparison

🗓 Publish year: 2025

🧑‍💻Authors: Gabriele De Vito, Filomena Ferrucci, Athanasios Angelakis
🏢Universities: University of Salerno, Italy - University of Amsterdam, The Netherlands

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📲Channel: @Bioinformatics
#review #llm #chantgpt
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📑 A review on the applications of Transformer-based language models for nucleotide sequence analysis

📕Journal: Computational and Structural Biotechnology Journal (I.F.=4.5)
🗓 Publish year: 2025

🧑‍💻
Authors: Nimisha Ghosh, Daniele Santoni, Indrajit Saha, Giovanni Felici
🏢Universities: Shiv Nadar University, India - National Research Council of Italy, Italy -

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📲Channel: @Bioinformatics
#review #chatgpt #llm #dna #sequence
👍101
📑 Application of large language models in disease diagnosis and treatment

📙 Journal: Chinese Medical Journal (I.F.=7.5)
🗓 Publish year: 2024

🧑‍💻
Authors: Xintian Yang, Tongxin Li, Qin Su, ...
🏢Universities: Fourth Military Medical University, China

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📲Channel: @Bioinformatics
#review #llm #chatgpt #disease
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📃Large Language Models in Bioinformatics: A Survey

🗓 Publish year: 2025

🧑‍💻
Authors: Z Wang, Z Wang, J Jiang, ...
🏢Universities: The Chinese University of Hong Kong - Peking University Third Hospital - The Hong Kong Polytechnic University, HK

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📲Channel: @Bioinformatics
#review #llm
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📑 Recent advances in deep learning and language models for studying the microbiome

📕Journal: Frontiers in Genetics (I.F.=2.8)
🗓 Publish year: 2025

🧑‍💻
Authors: Binghao Yan, Yunbi Nam, Lingyao Li, ...
🏢Universities: University of Pennsylvania, Vanderbilt University Medical Center, University of South Florida, University of Pittsburgh, United States

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📲Channel: @Bioinformatics
#review #deep_learning #llm #microbiome
👍3👌1
📄 Large Language Models in GenomicsA Perspective on Personalized Medicine

📓 Journal: Bioengineering (I.F.=3.8)
🗓Publish year: 2025

🧑‍💻Authors: Shahid AliD,Yazdan Ahmad Qadri, Khurshid Ahmad, ...
🏢Universities: Hainan University, China - Yeungnam University, Korea - Qassim University, Saudi Arabia - Anglia Ruskin University, UK - University of Agder, Norway

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📲Channel: @Bioinformatics
#review #llm #genomic #medicine
👍42
📄 A Survey of Large Language Model for Drug Research and Development

📓 Journal: IEEE Access (I.F.=0.8)
🗓Publish year: 2025

🧑‍💻Authors: Huijie Guo; Xudong Xing; Yongjie Zhou; ...
🏢Universities: China Pharmaceutical University & Chinese Academy of Sciences, China

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📲Channel: @Bioinformatics
#review #drug #llm
👍42
📑 Scientific Large Language Models: A Survey on Biological & Chemical Domains

📘 Journal: ACM Computing Surveys (🔥I.F.=28)
🗓Publish year: 2025

🧑‍💻Authors: Qiang Zhang, Keyan Ding, Tianwen Lv, ...
🏢Universities: Zhejiang University, China

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📦 Supplementary Materials

📲Channel: @Bioinformatics
#review #llm #protein #molecular #genomic
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📃 Large language models transform biological research: from architecture to utilization

📘 Journal: Science China Information Sciences (I.F.=7.6) Q1
🗓Publish year: 2025

🧑‍💻Authors: Tao Wang & Zeyu Luo
🏢Universities: Northwestern Polytechnical University & Northeast Forestry University, China

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📲Channel: @Bioinformatics
#review #llm #ai
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📃 A Survey on Foundation Language Models for Single-cell Biology

📖 Conference: In Proceedings of the 63rd Annual Meeting of the Association for Computational Linguistics
🗓Publish year: 2025

🧑‍💻Authors: Fan Zhang, Hao Chen, Zhihong Zhu, ...
🏢University: The Hong Kong University of Science and Technology, Peking University, Great Bay University, Westlake University

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📲Channel: @Bioinformatics
#review #llm #single_cell
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📃 The role of foundation models in enhancing the interpretability of multiomics modalities in precision medicine: Beyond digital twins

📕 Journal: FEBS Open Bio (I.F.=2.3)
🗓Publish year: 2025

🧑‍💻Authors: Sakhaa Alsaedi, Xin Gao, Takashi Gojobori
🏢University: King Abdullah University of Science and Technology (KAUST), Thuwal, Saudi Arabia

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📲Channel: @Bioinformatics
#review #llm #multiomics #digital_twins #medicine
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