Bioinformatics
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Bioinformatics, Computational Biology & Systems Biology

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📖 Current best practices in single-cell RNA-seq analysis: a tutorial

📘Journal: Molecular Systems Biology (I.F.=11.429)
🗓Publish year: 2019

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📲Channel: @Bioinformatics

#tutorial #RNA_seq
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📄Introduction to differential gene expression analysis using RNA-seq
💥Workshop document from Weill Cornell Medical College

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📲Channel: @Bioinformatics
#rna-seq
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📑A Beginner’s Guide to Analysis of RNA Sequencing Data

📘Journal: American Journal of Respiratory Cell and Molecular Biology (I.F.=7.748)
🗓Publish year: 2018

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📲Channel: @Bioinformatics

#RNA_seq
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📑Interpretation of differential gene expression results of RNA-seq data: review and integration

📘
Journal: Briefing in Bioinformatics (I.F.=13.994)
🗓Publish year: 2019

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📲Channel: @Bioinformatics
#review #gene_expression #rna_seq
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🎞 Co-expression network analysis using RNA-Seq data

💥Free recorded tutorial on Co-expression network analysis using RNA-Seq data presented at the ISCB DC Regional Student Group Workshop at the University of Maryland – College Park (June 15 2016).
🔹This tutorial provide a simple overview of co-expression network analysis, with an emphasis on the use of
RNA-Seq data.A motivation for the use of co-expression network analysis is provided and compared to other common types of RNA-Seq analyses such as differential expression analysis and gene set enrichment analysis. The use of adjacency matrices to represent networks is explored for several different types of networks and a small synthetic dataset is used to demonstrate each of the major steps in co-expression network construction and module detection. The tutorial portion of the presentation then applies some of these principles using a real dataset containing ~3000 genes, after filtering.

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📱Channel: @ComplexNetworkAnalysis

#video #Co_expression_network #RNA_Seq
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📃Temporal progress of gene expression analysis with RNA-Seq data: A review on the relationship between computational methods

📔Journal: Computational and Structural Biotechnology Journal (I.F.= 6)
🗓 Publish year: 2023

🧑‍💻Authors: Juliana Costa-Silva, Douglas S. Domingues, David Menotti, ...
🏢University: Federal University of Paraná, University of São Paulo, Universidade Tecnológica Federal do Paraná – UTFPR, Brzil

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📲Channel: @Bioinformatics
#review #rna_seq #gene_expression
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📄 A Survey on Methods for Predicting Polyadenylation Sites from DNA Sequences, Bulk RNA-Seq, and Single-Cell RNA-Seq

📕Journal: Genomics, Proteomics & Bioinformatics (GPB) (I.F.=9.5)
🗓Publish year: 2022

🧑‍💻Authors: Wenbin Ye, Qiwei Lian, Congting Ye, Xiaohui Wu
🏢University: Soochow University - Xiamen University, China

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📲Channel: @Bioinformatics
#review #Polyadenylation #RNA_Seq #Single_Cell
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📑 A guide to RNA sequencing and functional analysis

📔 Journal: Briefings in Bioinformatics (I.F.=6.8)
🗓Publish year: 2023

🧑‍💻Authors: Jiung-Wen Chen, Lisa Shrestha, George Green, ...
🏢University: University of Alabama at Birmingham, USA

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📲Channel: @Bioinformatics
#review #rna #rna_seq
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📚 Single-Cell RNA Sequencing Analysis: A Step-by-Step Overview
💥Book chapter from Springer

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📲Channel: @Bioinformatics
#bookchapter #single_cell #rna_seq
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📄 Recent trends in RNA informatics: a review of machine learning and deep learning for RNA secondary structure prediction and RNA drug discovery

📗 Journal: Briefings in Bioinformatics (I.F.=7.2)
🗓Publish year: 2025

🧑‍💻Authors: Kengo Sato & Michiaki Hamada
🏢Universities: Tokyo Denki University & Waseda University, Japan

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📲Channel: @Bioinformatics
#review #rna_seq
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