Bioinformatics

👨‍🏫A machine learning workshop with R
💥TCGA Biomarkers Identification using Machine Learning💥

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↙️ Slides
👨‍💻Code

📲Channel: @Bioinformatics
#video #machine_learning #biomarker #r

YouTube

TCGA Biomarkers Identification using Machine Learning | Complete Walkthrough

Well, mostly doing this since people have been asking to connect the database with some basic machine learning script , so I might as well capitalized on this. Anyhow, I mostly wrote this with the mindset on education and not really on research so the code…

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Bioinformatics

Forwarded from Network Analysis Resources & Updates

📄Basic and Advanced Network Visualization with R

💥Technical paper

📘 PDF

💻 Code

🗂️ data

📲Channel: @ComplexNetworkAnalysis

#tools #R #code

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3.7K views01:31

Bioinformatics

🎥 R or Python, Which Should I Learn as a Bioinformatician?
💥 Recorded webinar from NIH

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📲Channel: @Bioinformatics
#video #r #python

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4.53K views17:58

Bioinformatics

📽 Data Wrangling with R
💥 Bioinformatics Training and Education Program from NIH, 2022

📦 Course Materials
▫️Lesson 1: Introduction to R, RStudio
▫️Lesson 2: Getting started with R
▫️Lesson 3: Importing and reshaping data
▫️Lesson 4: Data Visualization with ggplot2
▫️Lesson 5: Introducing dplyr and the pipe
▫️Lesson 6: Continue data wrangling with dplyr
▫️Lesson 7: Important concepts review

📲Channel: @Bioinformatics
#video #course #r

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5.03K views17:14

Bioinformatics

🎞Bioinformatics with R & Linux
💥Full course with 25 session from Michael W. Vandewege (North Carolina State University)

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📲Channel: @Bioinformatics
#video #course #r

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4.41K views15:44

Bioinformatics

📖 Translational Bioinformatics with R
💥Free Online E-Book

From Preface: ...I am a data scientist working in the Pharma/Biotech industry, where my work is mainly related to biomarkers such as exploratory biomarkers analysis, subgroup identification, predictive and prognostic biomarker identification etc. I have a dual educational background in Biology and Computer Science, and have been applying statistics and machine learning in my daily work. The purpose of my wirting of this book is to showcase how to leverage advanced statistics and machine learning as well as causal inference in translational bioinformatics. This is an evolving field inviting innovations and ideas, and I would like to write this book to introduce this field to the general public, to inspire newcomers, to invite peers for critiques and suggestions and just to get the converation on translational bioinformatics started.

🗓Publish year: 2022

🌐 Study (Web version)

📲Channel: @Bioinformatics
#book #r #translational

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4.12K views18:08

Bioinformatics

👨‍🏫 Workshop in Applied Bioinformatics using R and Python
💥This online book aims to illustrate how you can implement bioinformatic code to perform data manipulation, exploration, mining, statistics and graphics

🗓 Date: 2023-03-15

🌐 Open the GitBook

📲Channel: @Bioinformatics
#workshop #course #r #python

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5.24K viewsedited 15:21

Bioinformatics

🎞 R for Biologists
💥Fully recorder and documented Beginner Bootcamp

🎬 Videos
📦 GitHub
📝 Syllabus

📲Channel: @Bioinformatics
#video #r #beginner

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4.75K views02:52

Bioinformatics

👨‍💻 Practical learning of Weighted Gene Correlation Network Analysis with R
💥 Jennifer Chang from Iowa State University

🌐 Open workbook

📲Channel: @Bioinformatics
#technical #wgcna #r

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4.28K views06:27

Bioinformatics

🧑‍💻ChatGPT may help bioinformaticians in programming

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📲Channel: @Bioinformatics
#chatgpt #r

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4.34K views16:44

Bioinformatics

📑 Ten simple rules for teaching an introduction to R

📕Journal: Plos Computational Biology (I.F.=4.3)
🗓Publish year: 2024

🧑‍💻Authors: Ava M. Hoffman, Carrie Wright
🏢University: Johns Hopkins University , United States of America

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📲Channel: @Bioinformatics
#r

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3.96K views18:12

Bioinformatics

📽 Easy R Tutorial for Bioinformatics

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📲Channel: @Bioinformatics
#video #r

YouTube

R Tutorial for Bioinformatics - Beginners Edition

R tutorial for Bioinformatics. Beginners Edition

Thank me with some coffee
https://www.buymeacoffee.com/informatician
https://www.paypal.com/paypalme/theinformatician

Get the R codes here: https://www.patreon.com/posts/r-tutorial-for-101714045
…

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4.7K views09:42

Bioinformatics

📑 Common Methods for Phylogenetic Tree Construction and Their Implementation in R

📕Journal: Bioengineering (I.F.=3.8)
🗓Publish year: 2024

🧑‍💻Authors: Yue Zou,Zixuan Zhang,Yujie Zeng, ...
🏢University: Chongqing Normal University - Chongqing Academy of Animal Science, China

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📲Channel: @Bioinformatics
#review #phylogenetic #r

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4.54K views13:27

Bioinformatics

🎥How to find Differentially Expressed Genes (DEGs) from RNA-seq Gene Expression Data with R

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📲Channel: @Bioinformatics
#video #deg #rna_seq #gene #r

YouTube

How to find Differentially Expressed Genes (DEGs) from RNA-seq Gene Expression Data | R-studio

"Revolutionize your RNA-seq data analysis skills with this ultimate hands-on tutorial! Learn how to create stunning PCA plots, interpret heatmaps, and master the art of differential gene expression analysis using DESeq2—all in R-Studio. This video takes you…

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4.45K views18:26

Bioinformatics

📚 R Learning Resources for Genomics
💥 GitBook website

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📲Channel: @Bioinformatics
#github #genomics #r #book

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3.33K viewsedited 17:45

Bioinformatics

🎥 Processing Gene Expression Data in R

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🖥 Code
📦Dataset

📲Channel: @Bioinformatics
#video #gene_expression #r

YouTube

Lesson 3: Reading Gene Expression Data into R

Hi everyone! This tutorial series is about how to do a basic transcriptomic analysis in R, using a real data set that compares gene expression in IPF lung tissue to healthy lung tissue.

All the code from my videos is available on my Github:
https://gith…

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3.52K views08:26

Bioinformatics

🎬 Bioinformatics & Genomics: From Data Analysis to AI Applications
💥 Recorded workshop from the university of Arizona

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🖥 Github Wiki

📲Channel: @Bioinformatics
#video #workshop #rna_seq #r #ai #ppi

YouTube

Bioinformatics & Genomics: From Data Analysis to AI Applications: Downstream Analysis of RNA-Seq PPI

Building on the foundation of identifying differentially expressed genes (DEGs) in the previous workshop, it's time to unlock the biological meaning behind those findings. In this session, we'll dive into powerful downstream analyses to uncover the rich insights…

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Bioinformatics

📑 Learning and teaching biological data science in the Bioconductor community

📕 Journal: PLOS Computational Biology (I.F.=3.6)
🗓Publish year: 2025

🧑‍💻Authors: Jenny Drnevich ,Frederick J. Tan ,Fabricio Almeida-Silva, ...
🏢Universities: University of Illinois Urbana-Champaign & Johns Hopkins University & , USA - Ghent University,Belgium - Universitat Pompeu Fabra, Spain - University of Limerick, Ireland

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📲Channel: @Bioinformatics
#data #bioconductor #r

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2.55K views08:22

Bioinformatics