🎬 Decomposing protein and genomic language models to understand what they are learning
📹 Watch
📲Channel: @Bioinformatics
#video #protein #genomics
📹 Watch
📲Channel: @Bioinformatics
#video #protein #genomics
YouTube
MLCB 2024: Sergey Ovchinnikov (MIT) Decomposing protein and genomic language models to understand...
MLCB 2024: Sergey Ovchinnikov (MIT)
Decomposing protein and genomic language models to understand what they are learning
Decomposing protein and genomic language models to understand what they are learning
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📹 Making sense of gene and protein lists with functional enrichment analysis
💥 from Australian BioCommons
🎞 Watch
📲Channel: @Bioinformatics
#video #gene #protein #enrichment_analysis
💥 from Australian BioCommons
🎞 Watch
📲Channel: @Bioinformatics
#video #gene #protein #enrichment_analysis
YouTube
Making sense of gene and protein lists with functional enrichment analysis
Do you have a long list of genes or proteins from omics experiments that you don’t know what to do with? This webinar explains how functional enrichment analysis can be used to understand what these lists mean by employing gene ontology and pathway information…
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📑 Machine learning approaches for predicting protein-ligand binding sites from sequence data
📔 Journal: Frontiers in Bioinformatics (I.F.=2.8)
🗓 Publish year: 2025
🧑💻Authors: Orhun Vural, Leon Jololian
🏢Universities: University of Alabama at Birmingham, USA
📎 Study the paper
📲Channel: @Bioinformatics
#review #protein #ligand
📔 Journal: Frontiers in Bioinformatics (I.F.=2.8)
🗓 Publish year: 2025
🧑💻Authors: Orhun Vural, Leon Jololian
🏢Universities: University of Alabama at Birmingham, USA
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📲Channel: @Bioinformatics
#review #protein #ligand
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📚 Introduction to Protein Folding
💥Book chapter
📎 Study
📲Channel: @Bioinformatics
#bookchapter #folding #protein
💥Book chapter
📎 Study
📲Channel: @Bioinformatics
#bookchapter #folding #protein
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📃 A Survey of Deep Learning Methods in Protein Bioinformatics and its Impact on Protein Design
🗓 Publish year: 2025
🧑💻Author: Weihang Dai
🏢Universities: The Hong Kong University of Science and Technology
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📲Channel: @Bioinformatics
#review #deep_learning #protein
🗓 Publish year: 2025
🧑💻Author: Weihang Dai
🏢Universities: The Hong Kong University of Science and Technology
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📲Channel: @Bioinformatics
#review #deep_learning #protein
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📃 A Comprehensive Guide to Validating Bioinformatics Findings: From In Silico to In Vitro
🗓 Publish year: 2025
🧑💻Authors: Tianyang Wang, Silin Chen, Yunze Wang, ... (17 authros)
🏢Universities: (University of Liverpool, UK), (Indiana University, USA), (Simon Fraser University, Canada), (Kyoto University, Japan), ...
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📲Channel: @Bioinformatics
#review #gene #protein #ai #multi_omics #NGS
🗓 Publish year: 2025
🧑💻Authors: Tianyang Wang, Silin Chen, Yunze Wang, ... (17 authros)
🏢Universities: (University of Liverpool, UK), (Indiana University, USA), (Simon Fraser University, Canada), (Kyoto University, Japan), ...
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📲Channel: @Bioinformatics
#review #gene #protein #ai #multi_omics #NGS
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📹 Deep Learning for Protein Structure Prediction
🎞 Watch
🖥 Slides & Abstract
📲Channel: @Bioinformatics
#video #deep_learning #protein
🎞 Watch
🖥 Slides & Abstract
📲Channel: @Bioinformatics
#video #deep_learning #protein
YouTube
Deep Learning for Protein Structure Prediction | Iaroslav Geraskin | Conf42 ML 2024
Read the abstract ➤ https://www.conf42.com/Machine_Learning_2024_Iaroslav_Geraskin_deep_learning_protein
Other sessions at this event ➤ https://www.conf42.com/ml2024
Support our mission ➤ https://www.conf42.com/support
Join Discord ➤ https://discord.gg/DnyHgrC7jC…
Other sessions at this event ➤ https://www.conf42.com/ml2024
Support our mission ➤ https://www.conf42.com/support
Join Discord ➤ https://discord.gg/DnyHgrC7jC…
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📃Teaching protein structure and function through molecular visualization
📘 Journal: Biochemistry and Molecular Biology Education (I.F.=1.2)
🗓Publish year: 2024
🧑💻Authors: Elisabeth Baland, Lucía Pérez Jimenez, André Mateus
🏢Universities: Umeå University, Sweden
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📲Channel: @Bioinformatics
#teaching #learning #protein
📘 Journal: Biochemistry and Molecular Biology Education (I.F.=1.2)
🗓Publish year: 2024
🧑💻Authors: Elisabeth Baland, Lucía Pérez Jimenez, André Mateus
🏢Universities: Umeå University, Sweden
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📲Channel: @Bioinformatics
#teaching #learning #protein
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📃 Advances in artificial intelligence-envisioned technologies for protein and nucleic acid research
📓 Journal: Drug Discovery Today (I.F.=6.5)
🗓 Publish year: 2025
🧑💻Authors: Amol D. Gholap, Abdelwahab Omri
🏢Universities: Laurentian University, Canada - St. John Institute of Pharmacy and Research, India
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🔊Audio Review of the paper
📲Channel: @Bioinformatics
#review #ai #protein #dna
📓 Journal: Drug Discovery Today (I.F.=6.5)
🗓 Publish year: 2025
🧑💻Authors: Amol D. Gholap, Abdelwahab Omri
🏢Universities: Laurentian University, Canada - St. John Institute of Pharmacy and Research, India
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🔊Audio Review of the paper
📲Channel: @Bioinformatics
#review #ai #protein #dna
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📄 Evaluating the advancements in protein language models for encoding strategies in protein function prediction: a comprehensive review
📘 Journal: Frontiers in Bioengineering and Biotechnology (I.F.=4.3)
🗓Publish year: 2025
🧑💻Authors: Jia-Ying Chen, Jing-Fu Wang, Yue Hu, ...
🏢Universities: Xinjiang University, China
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📲Channel: @Bioinformatics
#review #protein #language #chatgpt
📘 Journal: Frontiers in Bioengineering and Biotechnology (I.F.=4.3)
🗓Publish year: 2025
🧑💻Authors: Jia-Ying Chen, Jing-Fu Wang, Yue Hu, ...
🏢Universities: Xinjiang University, China
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📲Channel: @Bioinformatics
#review #protein #language #chatgpt
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📃 Decoding RNA–Protein Interactions: Methodological Advances and Emerging Challenges
📕 Journal: Advanced Genetics
🗓Publish year: 2025
🧑💻Authors: Wenkai Yi, Jian Yan
🏢Universities: City University of Hong Kong, Kowloon Tong, Hong Kong
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📲Channel: @Bioinformatics
#review #protein #rna
📕 Journal: Advanced Genetics
🗓Publish year: 2025
🧑💻Authors: Wenkai Yi, Jian Yan
🏢Universities: City University of Hong Kong, Kowloon Tong, Hong Kong
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📲Channel: @Bioinformatics
#review #protein #rna
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Forwarded from Network Analysis Resources & Updates
📄Heterogeneous network approaches to protein pathway prediction
📕 Journal: Computational and Structural Biotechnology Journal (I.F.=4.5)
🗓 Publish year: 2025
🧑💻Authors: Gowri Nayar, Russ B. Altman
🏢Universities: Stanford University, United States
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⚡️Channel: @ComplexNetworkAnalysis
#review #protein #pathway
📕 Journal: Computational and Structural Biotechnology Journal (I.F.=4.5)
🗓 Publish year: 2025
🧑💻Authors: Gowri Nayar, Russ B. Altman
🏢Universities: Stanford University, United States
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⚡️Channel: @ComplexNetworkAnalysis
#review #protein #pathway
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📑 A comprehensive survey of scoring functions for protein docking models
📗 Journal: BMC Bioinformatics (I.F.=2.9)
🗓Publish year: 2025
🧑💻Authors: Azam Shirali, Vitalii Stebliankin, Ukesh Karki, ...
🏢Universities: Florida International University, USA
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📲Channel: @Bioinformatics
#review #protein #docking #scoring_function
📗 Journal: BMC Bioinformatics (I.F.=2.9)
🗓Publish year: 2025
🧑💻Authors: Azam Shirali, Vitalii Stebliankin, Ukesh Karki, ...
🏢Universities: Florida International University, USA
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📲Channel: @Bioinformatics
#review #protein #docking #scoring_function
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📄 Classifying covalent protein binders by their targeted binding site
📓 Journal: Bioorganic & Medicinal Chemistry Letters (I.F.=2.5)
🗓Publish year: 2025
🧑💻Authors: Walaa A. Bedewy, John W. Mulawka, Marc J. Adler
🏢Universities: Toronto Metropolitan University, Canada - Helwan University, Egypt
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📲Channel: @Bioinformatics
#review #protein #covalent #binding_site
📓 Journal: Bioorganic & Medicinal Chemistry Letters (I.F.=2.5)
🗓Publish year: 2025
🧑💻Authors: Walaa A. Bedewy, John W. Mulawka, Marc J. Adler
🏢Universities: Toronto Metropolitan University, Canada - Helwan University, Egypt
📎 Study the paper
📲Channel: @Bioinformatics
#review #protein #covalent #binding_site
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🎓Structural characterization of interactions in biological complexes
💥PhD thesis from King Abdullah University of Science and Technology, Saudi Arabia
🗓Publish year: 2025
📎 Study thesis
📲Channel: @Bioinformatics
#thesis #phd #structure #protein #docking #antibody #antigen
💥PhD thesis from King Abdullah University of Science and Technology, Saudi Arabia
🗓Publish year: 2025
📎 Study thesis
📲Channel: @Bioinformatics
#thesis #phd #structure #protein #docking #antibody #antigen
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📑 Recent advances in deep learning for protein-protein interaction: a review
📗 Journal: BioData Mining (I.F.=4)
🗓Publish year: 2025
🧑💻Authors: Jiafu Cui, Siqi Yang, Litai Yi, ...
🏢Universities: Inner Mongolia University, China
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📲Channel: @Bioinformatics
#review #ppi #deep_learning #protein
📗 Journal: BioData Mining (I.F.=4)
🗓Publish year: 2025
🧑💻Authors: Jiafu Cui, Siqi Yang, Litai Yi, ...
🏢Universities: Inner Mongolia University, China
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📲Channel: @Bioinformatics
#review #ppi #deep_learning #protein
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📑 Scientific Large Language Models: A Survey on Biological & Chemical Domains
📘 Journal: ACM Computing Surveys (🔥I.F.=28)
🗓Publish year: 2025
🧑💻Authors: Qiang Zhang, Keyan Ding, Tianwen Lv, ...
🏢Universities: Zhejiang University, China
📎 Study the paper
📦 Supplementary Materials
📲Channel: @Bioinformatics
#review #llm #protein #molecular #genomic
📘 Journal: ACM Computing Surveys (🔥I.F.=28)
🗓Publish year: 2025
🧑💻Authors: Qiang Zhang, Keyan Ding, Tianwen Lv, ...
🏢Universities: Zhejiang University, China
📎 Study the paper
📦 Supplementary Materials
📲Channel: @Bioinformatics
#review #llm #protein #molecular #genomic
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📃 Transformers in Protein: A Survey
🗓Publish year: 2025
🧑💻Authors: Xiaowen Ling, Zhiqiang Li, Yanbin Wang, Zhuhong You
🏢Universities: Shenzhen MSU-BIT University & Northwestern Polytechnical University, China
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📲Channel: @Bioinformatics
#review #transformer #protein
🗓Publish year: 2025
🧑💻Authors: Xiaowen Ling, Zhiqiang Li, Yanbin Wang, Zhuhong You
🏢Universities: Shenzhen MSU-BIT University & Northwestern Polytechnical University, China
📎 Study the paper
📲Channel: @Bioinformatics
#review #transformer #protein
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📃 Flow Matching Meets Biology and Life Science: A Survey
🗓Publish year: 2025
🧑💻Authors: Zihao Li, Zhichen Zeng, Xiao Lin, ...
🏢University: University of Illinois Urbana-Champaign, USA
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📲Channel: @Bioinformatics
#review #flow_matching #ai #protein
🗓Publish year: 2025
🧑💻Authors: Zihao Li, Zhichen Zeng, Xiao Lin, ...
🏢University: University of Illinois Urbana-Champaign, USA
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📲Channel: @Bioinformatics
#review #flow_matching #ai #protein
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📃 Artificial intelligence-based methods for protein structure prediction: a survey
📕 Journal: Artificial Intelligence Review (I.F.=13.9)
🗓Publish year: 2025
🧑💻Authors: Zhi-Hui Zhan, Jun Hong, Jian-Yu Li, Cheng Wang, ...
🏢University: Nankai University & South China University of Technology & Xi’an Jiaotong University, China
📎 Study the paper
📲Channel: @Bioinformatics
#review #protein #strcuture
📕 Journal: Artificial Intelligence Review (I.F.=13.9)
🗓Publish year: 2025
🧑💻Authors: Zhi-Hui Zhan, Jun Hong, Jian-Yu Li, Cheng Wang, ...
🏢University: Nankai University & South China University of Technology & Xi’an Jiaotong University, China
📎 Study the paper
📲Channel: @Bioinformatics
#review #protein #strcuture
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