📑Feature selection methods and genomic big data: a systematic review
📘Journal: Journal of Big Data (I.F.=10.835)
🗓Publish year: 2019
📎 Study the paper
📲Channel: @Bioinformatics
#review #genomic #feature_selection
📘Journal: Journal of Big Data (I.F.=10.835)
🗓Publish year: 2019
📎 Study the paper
📲Channel: @Bioinformatics
#review #genomic #feature_selection
👍7
🎓Machine Learning for Genomic Data
📘BSc thesis from University of NUS, Singapore
🗓Publish year: 2019
💥Abstract: This report explores the application of machine learning techniques on short timeseries gene expression data. Although standard machine learning algorithms work well on longer time-series’, they often fail to find meaningful insights from fewer timepoints.
In this report, we explore model-based clustering techniques. We combine popular unsupervised learning techniques like K-Means, Gaussian Mixture Models, Bayesian Networks, Hidden Markov Models with the well-known Expectation Maximization algorithm. K-Means and Gaussian Mixture Models are fairly standard, while Hidden Markov Model and Bayesian Networks clustering are more novel ideas that suit time-series gene expression data.
📎 Study thesis
📲Channel: @Bioinformatics
#thesis #genomic #machine_learning
📘BSc thesis from University of NUS, Singapore
🗓Publish year: 2019
💥Abstract: This report explores the application of machine learning techniques on short timeseries gene expression data. Although standard machine learning algorithms work well on longer time-series’, they often fail to find meaningful insights from fewer timepoints.
In this report, we explore model-based clustering techniques. We combine popular unsupervised learning techniques like K-Means, Gaussian Mixture Models, Bayesian Networks, Hidden Markov Models with the well-known Expectation Maximization algorithm. K-Means and Gaussian Mixture Models are fairly standard, while Hidden Markov Model and Bayesian Networks clustering are more novel ideas that suit time-series gene expression data.
📎 Study thesis
📲Channel: @Bioinformatics
#thesis #genomic #machine_learning
👍8
📑A picture is worth a thousand base pairs
💥A review of Genome Browsers
📘 Journal: Nature-Technology Features (I.F.=63.58)
🗓Publish year: 2019
📎 Study the paper
📲Channel: @Bioinformatics
#genomic #tool #visualization
💥A review of Genome Browsers
📘 Journal: Nature-Technology Features (I.F.=63.58)
🗓Publish year: 2019
📎 Study the paper
📲Channel: @Bioinformatics
#genomic #tool #visualization
Nature
A picture is worth a thousand base pairs
Nature - A small but powerful toolset makes sharing genomic data visualizations straightforward.
👍3
🧑🏫 Free online 2days workshop
Implementing Genomic Research Projects
🗓 Date: Feb 1 and Feb 2, 2023
🕰Time: 13 - 16h30 CET
ℹ️ Details
✍🏻 Registration
📲Channel: @Bioinformatics
#workshop #genomic
Implementing Genomic Research Projects
🗓 Date: Feb 1 and Feb 2, 2023
🕰Time: 13 - 16h30 CET
ℹ️ Details
✍🏻 Registration
📲Channel: @Bioinformatics
#workshop #genomic
👍16❤2
📄A Brief Review on Deep Learning Applications in Genomic Studies
📘Journal: Frontiers in Systems Biology
🗓Publish year: 2022
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📲Channel: @Bioinformatics
#review #genomic #deep_learning
📘Journal: Frontiers in Systems Biology
🗓Publish year: 2022
📎 Study the paper
📲Channel: @Bioinformatics
#review #genomic #deep_learning
👍9👏1
📃Fifteen Years of Gene Set Analysis for High-Throughput Genomic Data: A Review of Statistical Approaches and Future Challenges
📘Journal: Entropy (I.F.=2.738)
🗓Publish year: 2020
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📲Channel: @Bioinformatics
#review #gene_set #genomic
📘Journal: Entropy (I.F.=2.738)
🗓Publish year: 2020
📎 Study the paper
📲Channel: @Bioinformatics
#review #gene_set #genomic
👍4❤1
📃Tasks, Techniques, and Tools for Genomic Data Visualization
📘Journal: Computer Graphics Forum (I.F.=2.363)
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📲Channel: @Bioinformatics
#review #visualization #genomic
📘Journal: Computer Graphics Forum (I.F.=2.363)
📎 Study the paper
📲Channel: @Bioinformatics
#review #visualization #genomic
👍4❤2
📄 A review of deep learning applications for genomic selection
📔Journal: BMC Genomics (I.F.=4.560)
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📲Channel: @Bioinformatics
#review #genomic #deep_learning
📔Journal: BMC Genomics (I.F.=4.560)
📎 Study the paper
📲Channel: @Bioinformatics
#review #genomic #deep_learning
👍5❤1👌1
🎞Foundational AI for Genomic Medicine and Therapeutic Design
💥by Marinka Zitnik, PhD from Harvard Medical School
📹 Watch
📲Channel: @Bioinformatics
#video #ai #genomic
💥by Marinka Zitnik, PhD from Harvard Medical School
📹 Watch
📲Channel: @Bioinformatics
#video #ai #genomic
YouTube
Foundational AI for Genomic Medicine and Therapeutic Design by Marinka Zitnik, PhD
Marinka Zitnik is an Assistant Professor of Biomedical Informatics at Harvard Medical School. She investigates machine learning for science and medicine. Her methods leverage biomedical data at the scale of billions of interactions among millions of entities…
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📽 Machine Learning and Artificial Intelligence Tools to Advance Genomic Translational Research
💥Recorded open session from NIH National Human Genome Research Institute
🎞 Watch
📲Channel: @Bioinformatics
#video #ml #ai #genomic
💥Recorded open session from NIH National Human Genome Research Institute
🎞 Watch
📲Channel: @Bioinformatics
#video #ml #ai #genomic
YouTube
Machine Learning and Artificial Intelligence Tools to Advance Genomic Translational Research
September 18, 2023 - Sep 18, 2023
Machine Learning and Artificial Intelligence Tools to Advance Genomic Translational Research - Sandhya Xirasagar
The National Human Genome Research Institute will hold the 100th Meeting of National Advisory Council for…
Machine Learning and Artificial Intelligence Tools to Advance Genomic Translational Research - Sandhya Xirasagar
The National Human Genome Research Institute will hold the 100th Meeting of National Advisory Council for…
👍5
📄Application of Genomic Data in Translational Medicine During the Big Data Era
📕 Journal: Frontiers in Bioscience-Landmark (I.F.=3.1)
🗓Publish year: 2024
🧑💻Authors: Yun Zhang, Jian Yu, Xiaoyan Xie, ...
🏢University: The First Affiliated Hospital of Nanjing Medical University - Obstetrics and Gynecology Hospital of Fudan University,China
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📲Channel: @Bioinformatics
#review #genomic #medicine
📕 Journal: Frontiers in Bioscience-Landmark (I.F.=3.1)
🗓Publish year: 2024
🧑💻Authors: Yun Zhang, Jian Yu, Xiaoyan Xie, ...
🏢University: The First Affiliated Hospital of Nanjing Medical University - Obstetrics and Gynecology Hospital of Fudan University,China
📎 Study the paper
📲Channel: @Bioinformatics
#review #genomic #medicine
❤3👍1
📃 Genomic data integration tutorial, a plant case study
📘Journal: BMC Genomics (I.F.= 4.4)
🗓Publish year: 2024
🧑💻Authors: Emile Mardoc, Mamadou Dia Sow, Sébastien Déjean & Jérôme Salse
🏢University: Université Paul Sabatier - Chemin de Beaulieu, France
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📲Channel: @Bioinformatics
#tutorial #genomic #plant
📘Journal: BMC Genomics (I.F.= 4.4)
🗓Publish year: 2024
🧑💻Authors: Emile Mardoc, Mamadou Dia Sow, Sébastien Déjean & Jérôme Salse
🏢University: Université Paul Sabatier - Chemin de Beaulieu, France
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📲Channel: @Bioinformatics
#tutorial #genomic #plant
👍7
📑 Using genomic data and machine learning to predict antibiotic resistance: A tutorial paper
📕 Journal: PLOS Computational Biology (I.F.=3.8)
🗓 Publish year: 2025
🧑💻Authors: Faye Orcales ,Lucy Moctezuma Tan ,Meris Johnson-Hagler, ...
🏢Universities: University of California San Francisco - San Francisco State University, USA
📎 Study the paper
📲Channel: @Bioinformatics
#tutorial #genomic #antibiotic
📕 Journal: PLOS Computational Biology (I.F.=3.8)
🗓 Publish year: 2025
🧑💻Authors: Faye Orcales ,Lucy Moctezuma Tan ,Meris Johnson-Hagler, ...
🏢Universities: University of California San Francisco - San Francisco State University, USA
📎 Study the paper
📲Channel: @Bioinformatics
#tutorial #genomic #antibiotic
❤3
📄 Large Language Models in Genomics—A Perspective on Personalized Medicine
📓 Journal: Bioengineering (I.F.=3.8)
🗓Publish year: 2025
🧑💻Authors: Shahid AliD,Yazdan Ahmad Qadri, Khurshid Ahmad, ...
🏢Universities: Hainan University, China - Yeungnam University, Korea - Qassim University, Saudi Arabia - Anglia Ruskin University, UK - University of Agder, Norway
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📲Channel: @Bioinformatics
#review #llm #genomic #medicine
📓 Journal: Bioengineering (I.F.=3.8)
🗓Publish year: 2025
🧑💻Authors: Shahid AliD,Yazdan Ahmad Qadri, Khurshid Ahmad, ...
🏢Universities: Hainan University, China - Yeungnam University, Korea - Qassim University, Saudi Arabia - Anglia Ruskin University, UK - University of Agder, Norway
📎 Study the paper
📲Channel: @Bioinformatics
#review #llm #genomic #medicine
👍4❤2
📃 Bioinformatics Applications in Chronic Diseases: A Comprehensive Review of Genomic, Transcriptomics, Proteomic, Metabolomics, and Machine Learning Approaches
📘 Journal: Medinformatics
🗓Publish year: 2024
🧑💻Authors: Taiwo Temitope Ogunjobi, Precious Nkeiruka Ohaeri, Olamide Tayo Akintola, ...
🏢Universities: Ladoke Akintola University of Technology & Obafemi Awolowo University & Lagos State University, Nigeria
📎 Study the paper
📲Channel: @Bioinformatics
#review #Chronic #genomic #transcriptomics #proteomic #metabolomics #machine_learning
📘 Journal: Medinformatics
🗓Publish year: 2024
🧑💻Authors: Taiwo Temitope Ogunjobi, Precious Nkeiruka Ohaeri, Olamide Tayo Akintola, ...
🏢Universities: Ladoke Akintola University of Technology & Obafemi Awolowo University & Lagos State University, Nigeria
📎 Study the paper
📲Channel: @Bioinformatics
#review #Chronic #genomic #transcriptomics #proteomic #metabolomics #machine_learning
❤4👍3👏1
📑 Scientific Large Language Models: A Survey on Biological & Chemical Domains
📘 Journal: ACM Computing Surveys (🔥I.F.=28)
🗓Publish year: 2025
🧑💻Authors: Qiang Zhang, Keyan Ding, Tianwen Lv, ...
🏢Universities: Zhejiang University, China
📎 Study the paper
📦 Supplementary Materials
📲Channel: @Bioinformatics
#review #llm #protein #molecular #genomic
📘 Journal: ACM Computing Surveys (🔥I.F.=28)
🗓Publish year: 2025
🧑💻Authors: Qiang Zhang, Keyan Ding, Tianwen Lv, ...
🏢Universities: Zhejiang University, China
📎 Study the paper
📦 Supplementary Materials
📲Channel: @Bioinformatics
#review #llm #protein #molecular #genomic
👍7❤3🔥1👏1👌1
📄Emerging applications of machine learning in genomic medicine and healthcare
📘 Journal: Critical Reviews in Clinical Laboratory Sciences (I.F.=5.5)
🗓Publish year: 2024
🧑💻Authors: Narjice Chafai, Luigi Bonizzi, Sara Botti & Bouabid Badaoui
🏢University: University in Rabat & Polytechnic University, Morocco - University of Milan, Italy
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📲Channel: @Bioinformatics
#review #genomic #medicine
📘 Journal: Critical Reviews in Clinical Laboratory Sciences (I.F.=5.5)
🗓Publish year: 2024
🧑💻Authors: Narjice Chafai, Luigi Bonizzi, Sara Botti & Bouabid Badaoui
🏢University: University in Rabat & Polytechnic University, Morocco - University of Milan, Italy
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📲Channel: @Bioinformatics
#review #genomic #medicine
👍3❤2👌1
📑 Artificial intelligence applications to genomic data in cancer research: a review of recent trends and emerging areas
📙 Journal: Discover Analytics
🗓Publish year: 2024
🧑💻Authors: Maria Frasca, Davide La Torre, Marco Repetto ,...
🏢Universities: University of Milan & University of Rome, Italy - Université Côte d’Azur, France
📎 Study the paper
📲Channel: @Bioinformatics
#review #ai #cancer #genomic
📙 Journal: Discover Analytics
🗓Publish year: 2024
🧑💻Authors: Maria Frasca, Davide La Torre, Marco Repetto ,...
🏢Universities: University of Milan & University of Rome, Italy - Université Côte d’Azur, France
📎 Study the paper
📲Channel: @Bioinformatics
#review #ai #cancer #genomic
❤4👍1👏1