Bioinformatics
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Bioinformatics, Computational Biology & Systems Biology

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📄A quick overview of the application of machine learning techniques on biomedical graphs

💥 Technical Paper

🗓Publish year: May 10, 2022

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📲Channel: @Bioinformatics

#tachnical #graph #biomedical
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📄Graph Representation Learning in Biomedicine

🗓Publish year: 2022

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📲Channel: @Bioinformatics
#graph #biomedicine
👍5
📄Network-based machine learning and graph theory algorithms for precision oncology

📘Journal: npj Precision Oncology(I.F=10.092)

🗓Publish year: 2017

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📲Channel: @ComplexNetworkAnalysis
#paper #machine_Learning #graph
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📃Graph representation learning in bioinformatics: trends, methods and applications

📘Journal: Briefings in Bioinformatics (I.F.=11.622)
🗓Publish year: 2022

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📲Channel: @Bioinformatics
#review #graph_representation_learning
👍112
📄Disease Prediction Using Graph Machine Learning Based on Electronic Health Data: A Review of Approaches and Trends

📘journal: HEALTHCARE-BASEL (I.F=2.8)
🗓Publish year: 2023

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📱Channel: @ComplexNetworkAnalysis
#paper #Disease #Prediction #Graph_Machine_Learning #Electronic #Health #Trends #Review
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📄Visibility graph analysis for brain: scoping review

📘 journal: Frontiers in Neuroscience (I.F=5.152)
🗓
Publish year: 2023

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📲Channel: @ComplexNetworkAnalysis
#paper #graph #brain #review
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📃Graph Neural Network approaches for single-cell data: A recent overview

🗓Publish year: 2023

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📲Channel: @Bioinformatics
#review #graph_neural_network #single_cell
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📄Current and future directions in network biology

🗓Publish year: 2023

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📲Channel: @ComplexNetworkAnalysis
#paper #graph #biology
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📃 Graph-Theoretical Analysis of Biological Networks: A Survey

📘 Journal: Computation (I.F=2.2)
🗓 Publish year: 2023

🧑‍💻Author: Kayhan Erciyes
🏢University: Marmara University

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📱Channel: @ComplexNetworkAnalysis
#paper #Graph #Biological #Survey
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🎞 Machine Learning with Graphs: Graph Neural Networks in Computational Biology

💥Free recorded course by Prof. Marinka Zitnik

💥In this lecture, Prof. Marinka gives an overview of why graph learning techniques can greatly help with computational biology research. Concretely, this talk covers 3 exemplar use cases: (1) Discovering safe drug-drug combinations via multi-relational link prediction on heterogenous knowledge graphs; (2) Classify patient outcomes and diseases via learning subgraph embeddings; and (3) Learning effective disease treatments through few-shot learning for graphs.

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📲Channel: @ComplexNetworkAnalysis

#video #course #Graph #GNN #Machine_Learning #computational_biology
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🎓New graph learning approaches for exploring gene and protein function

📗Doctoral Thesis from ETH Zurich

🗓Publish year: 2024

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📲Channel: @Bioinformatics
#thesis #network #gene #protein #graph #deep_learning #gnn
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📚 Advancing Biomedicine with Graph Representation Learning: Recent Progress, Challenges, and Future Directions
💥 Book Chapter from IMIA Yearbook of Medical Informatics

🗓Publish year: 2023

🧑‍💻
Authors: Fang Li , Yi Nian , Zenan Sun , Cui Tao
🏢University: University of Texas Health Science Center at Houston, USA

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📲Channel: @Bioinformatics
#book #chapter #Graph_representation_learning #biomedicine
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📑 Application of graph theory in liver research: A review

🗓 Publish year: 2024
📕Journal: Portal Hypertension & Cirrhosis

🧑‍💻Authors: Xumei Hu, Longyu Sun, Rencheng Zheng, ...
🏢
Universities: Fudan University, China

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⚡️Channel: @ComplexNetworkAnalysis
#review #liver #graph
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📃Molecule generation for drug design: A graph learning perspective

📗 Journal: Fundamental Research (I.F.=5.7)
🗓 Publish year: 2024

🧑‍💻Authors: Nianzu Yang, Huaijin Wu, Kaipeng Zeng, ...

🏢Universities: Shanghai Jiao Tong University, China

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📲Channel: @Bioinformatics
#review #molecule #drug #graph
2
📑 Graph Neural Networks in Modern AI-aided Drug Discovery

🗓Publish year: 2025

🧑‍💻Authors: Odin Zhang, Haitao Lin, Xujun Zhang, ...
🏢Universities: Zhejiang University, Hangzhou & Westlake University, China - Harvard University, USA

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📲Channel: @Bioinformatics
#review #drug #ai #gnn #graph_neural_network
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📄 Interpretable graph-based models on multimodal biomedical data integration: A technical review and benchmarking

🗓 Publish year: 2025

🧑‍💻Authors: Alireza Sadeghi, Farshid Hajati, Ahmadreza Argha, ...
🏢
Universities: Clemson University, USA - University of New England & UNSW Sydney, Australia - Chinese Academy of Sciences, China.

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⚡️Channel: @ComplexNetworkAnalysis
#review #multimodal #biomedical #interpretable #graph_machine_learning #explainability
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